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The I-BAR protein Ivy1 is an effector of the Rab7 GTPase Ypt7 involved in vacuole membrane homeostasis.

Identifieur interne : 000B98 ( Main/Exploration ); précédent : 000B97; suivant : 000B99

The I-BAR protein Ivy1 is an effector of the Rab7 GTPase Ypt7 involved in vacuole membrane homeostasis.

Auteurs : Johannes Numrich [Allemagne] ; Marie-Pierre Péli-Gulli [Suisse] ; Henning Arlt [Allemagne] ; Alessandro Sardu [Suisse] ; Janice Griffith [Pays-Bas] ; Tim Levine [Royaume-Uni] ; Siegfried Engelbrecht-Vandré [Allemagne] ; Fulvio Reggiori [Pays-Bas] ; Claudio De Virgilio [Suisse] ; Christian Ungermann [Allemagne]

Source :

RBID : pubmed:25999476

Descripteurs français

English descriptors

Abstract

Membrane fusion at the vacuole depends on a conserved machinery that includes SNAREs, the Rab7 homolog Ypt7 and its effector HOPS. Here, we demonstrate that Ypt7 has an unexpected additional function by controlling membrane homeostasis and nutrient-dependent signaling on the vacuole surface. We show that Ivy1, the yeast homolog of mammalian missing-in-metastasis (MIM), is a vacuolar effector of Ypt7-GTP and interacts with the EGO/ragulator complex, an activator of the target of rapamycin kinase complex 1 (TORC1) on vacuoles. Loss of Ivy1 does not affect EGO vacuolar localization and function. In combination with the deletion of individual subunits of the V-ATPase, however, we observed reduced TORC1 activity and massive enlargement of the vacuole surface. Consistent with this, Ivy1 localizes to invaginations at the vacuole surface and on liposomes in a phosphoinositide- and Ypt7-GTP-controlled manner, which suggests a role in microautophagy. Our data, thus, reveal that Ivy1 is a novel regulator of vacuole membrane homeostasis with connections to TORC1 signaling.

DOI: 10.1242/jcs.164905
PubMed: 25999476


Affiliations:


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<term>Autophagy (MeSH)</term>
<term>Carrier Proteins (metabolism)</term>
<term>Endocytosis (MeSH)</term>
<term>Homeostasis (MeSH)</term>
<term>Intracellular Membranes (metabolism)</term>
<term>Mechanistic Target of Rapamycin Complex 1 (MeSH)</term>
<term>Models, Biological (MeSH)</term>
<term>Multiprotein Complexes (MeSH)</term>
<term>Phosphatidylinositols (metabolism)</term>
<term>Protein Binding (MeSH)</term>
<term>Saccharomyces cerevisiae (metabolism)</term>
<term>Saccharomyces cerevisiae (ultrastructure)</term>
<term>Saccharomyces cerevisiae Proteins (metabolism)</term>
<term>Signal Transduction (MeSH)</term>
<term>TOR Serine-Threonine Kinases (MeSH)</term>
<term>Vacuoles (metabolism)</term>
<term>Vacuoles (ultrastructure)</term>
<term>rab GTP-Binding Proteins (metabolism)</term>
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<keywords scheme="KwdFr" xml:lang="fr">
<term>Autophagie (MeSH)</term>
<term>Complexe-1 cible mécanistique de la rapamycine (MeSH)</term>
<term>Complexes multiprotéiques (MeSH)</term>
<term>Endocytose (MeSH)</term>
<term>Homéostasie (MeSH)</term>
<term>Liaison aux protéines (MeSH)</term>
<term>Membranes intracellulaires (métabolisme)</term>
<term>Modèles biologiques (MeSH)</term>
<term>Phosphatidyl inositols (métabolisme)</term>
<term>Protéines G rab (métabolisme)</term>
<term>Protéines de Saccharomyces cerevisiae (métabolisme)</term>
<term>Protéines de transport (métabolisme)</term>
<term>Saccharomyces cerevisiae (métabolisme)</term>
<term>Saccharomyces cerevisiae (ultrastructure)</term>
<term>Sérine-thréonine kinases TOR (MeSH)</term>
<term>Transduction du signal (MeSH)</term>
<term>Vacuoles (métabolisme)</term>
<term>Vacuoles (ultrastructure)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en">
<term>Carrier Proteins</term>
<term>Phosphatidylinositols</term>
<term>Saccharomyces cerevisiae Proteins</term>
<term>rab GTP-Binding Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en">
<term>Intracellular Membranes</term>
<term>Saccharomyces cerevisiae</term>
<term>Vacuoles</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr">
<term>Membranes intracellulaires</term>
<term>Phosphatidyl inositols</term>
<term>Protéines G rab</term>
<term>Protéines de Saccharomyces cerevisiae</term>
<term>Protéines de transport</term>
<term>Saccharomyces cerevisiae</term>
<term>Vacuoles</term>
</keywords>
<keywords scheme="MESH" qualifier="ultrastructure" xml:lang="en">
<term>Saccharomyces cerevisiae</term>
<term>Vacuoles</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Autophagy</term>
<term>Endocytosis</term>
<term>Homeostasis</term>
<term>Mechanistic Target of Rapamycin Complex 1</term>
<term>Models, Biological</term>
<term>Multiprotein Complexes</term>
<term>Protein Binding</term>
<term>Signal Transduction</term>
<term>TOR Serine-Threonine Kinases</term>
</keywords>
<keywords scheme="MESH" qualifier="ultrastructure" xml:lang="fr">
<term>Autophagie</term>
<term>Complexe-1 cible mécanistique de la rapamycine</term>
<term>Complexes multiprotéiques</term>
<term>Endocytose</term>
<term>Homéostasie</term>
<term>Liaison aux protéines</term>
<term>Modèles biologiques</term>
<term>Saccharomyces cerevisiae</term>
<term>Sérine-thréonine kinases TOR</term>
<term>Transduction du signal</term>
<term>Vacuoles</term>
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<div type="abstract" xml:lang="en">Membrane fusion at the vacuole depends on a conserved machinery that includes SNAREs, the Rab7 homolog Ypt7 and its effector HOPS. Here, we demonstrate that Ypt7 has an unexpected additional function by controlling membrane homeostasis and nutrient-dependent signaling on the vacuole surface. We show that Ivy1, the yeast homolog of mammalian missing-in-metastasis (MIM), is a vacuolar effector of Ypt7-GTP and interacts with the EGO/ragulator complex, an activator of the target of rapamycin kinase complex 1 (TORC1) on vacuoles. Loss of Ivy1 does not affect EGO vacuolar localization and function. In combination with the deletion of individual subunits of the V-ATPase, however, we observed reduced TORC1 activity and massive enlargement of the vacuole surface. Consistent with this, Ivy1 localizes to invaginations at the vacuole surface and on liposomes in a phosphoinositide- and Ypt7-GTP-controlled manner, which suggests a role in microautophagy. Our data, thus, reveal that Ivy1 is a novel regulator of vacuole membrane homeostasis with connections to TORC1 signaling. </div>
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<ELocationID EIdType="doi" ValidYN="Y">10.1242/jcs.164905</ELocationID>
<Abstract>
<AbstractText>Membrane fusion at the vacuole depends on a conserved machinery that includes SNAREs, the Rab7 homolog Ypt7 and its effector HOPS. Here, we demonstrate that Ypt7 has an unexpected additional function by controlling membrane homeostasis and nutrient-dependent signaling on the vacuole surface. We show that Ivy1, the yeast homolog of mammalian missing-in-metastasis (MIM), is a vacuolar effector of Ypt7-GTP and interacts with the EGO/ragulator complex, an activator of the target of rapamycin kinase complex 1 (TORC1) on vacuoles. Loss of Ivy1 does not affect EGO vacuolar localization and function. In combination with the deletion of individual subunits of the V-ATPase, however, we observed reduced TORC1 activity and massive enlargement of the vacuole surface. Consistent with this, Ivy1 localizes to invaginations at the vacuole surface and on liposomes in a phosphoinositide- and Ypt7-GTP-controlled manner, which suggests a role in microautophagy. Our data, thus, reveal that Ivy1 is a novel regulator of vacuole membrane homeostasis with connections to TORC1 signaling. </AbstractText>
<CopyrightInformation>© 2015. Published by The Company of Biologists Ltd.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Numrich</LastName>
<ForeName>Johannes</ForeName>
<Initials>J</Initials>
<AffiliationInfo>
<Affiliation>University of Osnabrück, Department of Biology/Chemistry, Biochemistry section, Barbarastrasse 13, 49076 Osnabrück, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Péli-Gulli</LastName>
<ForeName>Marie-Pierre</ForeName>
<Initials>MP</Initials>
<AffiliationInfo>
<Affiliation>University of Fribourg, Department of Biology, Division of Biochemistry, Chemin du Musée 10, Fribourg CH-1700, Switzerland.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Arlt</LastName>
<ForeName>Henning</ForeName>
<Initials>H</Initials>
<AffiliationInfo>
<Affiliation>University of Osnabrück, Department of Biology/Chemistry, Biochemistry section, Barbarastrasse 13, 49076 Osnabrück, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Sardu</LastName>
<ForeName>Alessandro</ForeName>
<Initials>A</Initials>
<AffiliationInfo>
<Affiliation>University of Fribourg, Department of Biology, Division of Biochemistry, Chemin du Musée 10, Fribourg CH-1700, Switzerland.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Griffith</LastName>
<ForeName>Janice</ForeName>
<Initials>J</Initials>
<AffiliationInfo>
<Affiliation>University Medical Centre Utrecht, Center for Molecular Medicine, Department of Cell Biology, Heidelberglaan 100, Utrecht 3584 CX, The Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Levine</LastName>
<ForeName>Tim</ForeName>
<Initials>T</Initials>
<AffiliationInfo>
<Affiliation>UCL Institute of Ophthalmology, Department of Cell Biology, 11-43 Bath St., London EC1V 9EL, UK.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Engelbrecht-Vandré</LastName>
<ForeName>Siegfried</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>University of Osnabrück, Department of Biology/Chemistry, Biochemistry section, Barbarastrasse 13, 49076 Osnabrück, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Reggiori</LastName>
<ForeName>Fulvio</ForeName>
<Initials>F</Initials>
<AffiliationInfo>
<Affiliation>University Medical Centre Utrecht, Center for Molecular Medicine, Department of Cell Biology, Heidelberglaan 100, Utrecht 3584 CX, The Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>De Virgilio</LastName>
<ForeName>Claudio</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>University of Fribourg, Department of Biology, Division of Biochemistry, Chemin du Musée 10, Fribourg CH-1700, Switzerland.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Ungermann</LastName>
<ForeName>Christian</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>University of Osnabrück, Department of Biology/Chemistry, Biochemistry section, Barbarastrasse 13, 49076 Osnabrück, Germany cu@uos.de.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2015</Year>
<Month>05</Month>
<Day>21</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>England</Country>
<MedlineTA>J Cell Sci</MedlineTA>
<NlmUniqueID>0052457</NlmUniqueID>
<ISSNLinking>0021-9533</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D002352">Carrier Proteins</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="C475841">IVY1 protein, S cerevisiae</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D046912">Multiprotein Complexes</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010716">Phosphatidylinositols</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D029701">Saccharomyces cerevisiae Proteins</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>EC 2.7.1.1</RegistryNumber>
<NameOfSubstance UI="D058570">TOR Serine-Threonine Kinases</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>EC 2.7.11.1</RegistryNumber>
<NameOfSubstance UI="D000076222">Mechanistic Target of Rapamycin Complex 1</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>EC 3.6.1.-</RegistryNumber>
<NameOfSubstance UI="C079005">YPT7 protein, S cerevisiae</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>EC 3.6.5.2</RegistryNumber>
<NameOfSubstance UI="D020691">rab GTP-Binding Proteins</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList>
<MeshHeading>
<DescriptorName UI="D001343" MajorTopicYN="N">Autophagy</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D002352" MajorTopicYN="N">Carrier Proteins</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D004705" MajorTopicYN="N">Endocytosis</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D006706" MajorTopicYN="Y">Homeostasis</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D007425" MajorTopicYN="N">Intracellular Membranes</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D000076222" MajorTopicYN="N">Mechanistic Target of Rapamycin Complex 1</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D008954" MajorTopicYN="N">Models, Biological</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D046912" MajorTopicYN="N">Multiprotein Complexes</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010716" MajorTopicYN="N">Phosphatidylinositols</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D011485" MajorTopicYN="N">Protein Binding</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D012441" MajorTopicYN="N">Saccharomyces cerevisiae</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName>
<QualifierName UI="Q000648" MajorTopicYN="N">ultrastructure</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D029701" MajorTopicYN="N">Saccharomyces cerevisiae Proteins</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D015398" MajorTopicYN="N">Signal Transduction</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D058570" MajorTopicYN="N">TOR Serine-Threonine Kinases</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D014617" MajorTopicYN="N">Vacuoles</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName>
<QualifierName UI="Q000648" MajorTopicYN="N">ultrastructure</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D020691" MajorTopicYN="N">rab GTP-Binding Proteins</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="N">EGO complex</Keyword>
<Keyword MajorTopicYN="N">Ivy1</Keyword>
<Keyword MajorTopicYN="N">TORC1</Keyword>
<Keyword MajorTopicYN="N">Vacuole biogenesis</Keyword>
<Keyword MajorTopicYN="N">Vps33</Keyword>
<Keyword MajorTopicYN="N">Ypt7</Keyword>
</KeywordList>
</MedlineCitation>
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<History>
<PubMedPubDate PubStatus="received">
<Year>2014</Year>
<Month>10</Month>
<Day>22</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted">
<Year>2015</Year>
<Month>05</Month>
<Day>18</Day>
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<Year>2015</Year>
<Month>5</Month>
<Day>23</Day>
<Hour>6</Hour>
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<Day>23</Day>
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<PubMedPubDate PubStatus="medline">
<Year>2016</Year>
<Month>3</Month>
<Day>28</Day>
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<Minute>0</Minute>
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</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">25999476</ArticleId>
<ArticleId IdType="pii">jcs.164905</ArticleId>
<ArticleId IdType="doi">10.1242/jcs.164905</ArticleId>
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</pubmed>
<affiliations>
<list>
<country>
<li>Allemagne</li>
<li>Pays-Bas</li>
<li>Royaume-Uni</li>
<li>Suisse</li>
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<region>
<li>Basse-Saxe</li>
<li>Canton de Fribourg</li>
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<settlement>
<li>Fribourg</li>
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<li>Université de Fribourg</li>
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<name sortKey="Arlt, Henning" sort="Arlt, Henning" uniqKey="Arlt H" first="Henning" last="Arlt">Henning Arlt</name>
<name sortKey="Engelbrecht Vandre, Siegfried" sort="Engelbrecht Vandre, Siegfried" uniqKey="Engelbrecht Vandre S" first="Siegfried" last="Engelbrecht-Vandré">Siegfried Engelbrecht-Vandré</name>
<name sortKey="Ungermann, Christian" sort="Ungermann, Christian" uniqKey="Ungermann C" first="Christian" last="Ungermann">Christian Ungermann</name>
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<name sortKey="Peli Gulli, Marie Pierre" sort="Peli Gulli, Marie Pierre" uniqKey="Peli Gulli M" first="Marie-Pierre" last="Péli-Gulli">Marie-Pierre Péli-Gulli</name>
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<name sortKey="De Virgilio, Claudio" sort="De Virgilio, Claudio" uniqKey="De Virgilio C" first="Claudio" last="De Virgilio">Claudio De Virgilio</name>
<name sortKey="Sardu, Alessandro" sort="Sardu, Alessandro" uniqKey="Sardu A" first="Alessandro" last="Sardu">Alessandro Sardu</name>
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